Current version: 0.2, 8/15/2015
BDMPI is a message passing library and associated runtime system for developing out-of-core distributed computing applications for problems whose aggregate memory requirements exceed the amount of memory that is available on the underlying computing cluster. BDMPI is based on the Message Passing Interface (MPI) and provides a subset of MPI’s API along with some extensions that are designed for BDMPI’s memory and execution model.
A BDMPI-based application is a standard memory-scalable parallel MPI program that was developed assuming that the underlying system has enough computational nodes to allow for the in-memory execution of the computations. This program is then executed using a sufficiently large number of processes so that the per-process memory fits within the physical memory available on the underlying computational node(s). BDMPI maps one or more of these processes to the computational nodes by relying on the OS’s virtual memory management to accommodate the aggregate amount of memory required by them. BDMPI prevents memory thrashing by coordinating the execution of these processes using node-level co-operative multi-tasking that limits the number of processes that can be running at any given time. This ensures that the currently running process(es) can establish and retain memory residency and thus achieve efficient execution. BDMPI exploits the natural blocking points that exist in MPI programs to transparently schedule the co-operative execution of the different processes. In addition, BDMPI’s implementation of MPI’s communication operations is done so that to maximize the time over which a process can execute between successive blocking points. This allows it to amortize the cost of loading data from disk over the maximal amount of computations that can be performed.
Since BDMPI is based on the standard MPI library, it also provides a framework that allows the automated out-of-core execution of existing MPI applications. BDMPI is implemented in such a way so that to be a drop-in replacement of existing MPI implementations and allow existing codes that utilize the subset of MPI functions implemented by BDMPI to compile unchanged.
The distribution of BDMPI contains a number of source files written entirely in ANSI C, and is currently designed for Linux systems. Getting the files
Latest stable release:
After downloading BDMPI you need to uncompress it and untar it. This is achieved by executing the following command:
tar -xzf bdmpi-x.y.z.tar.gzAt this point you should have a directory named bdmpi-x.y.z, This directory contains BDMPI’s source code. To build BDMPI, follow the instructions in bdmpi-x.y.z/README.
Instructions describing how to use BDMPI can be found at bdmpi-x.y.z/doc/refmap.pdf or bdmpi-x.y.z/doc/html/index.html..